If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ), 'gf_id' => 'HOM05D000686', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000686' ), 'data_identifier' => 'HOM05D000686', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000686', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p49300' => 'bna', 'A04p27120' => 'bna', 'A06p49000' => 'bna', 'A08p11940' => 'bna', 'Aa31LG10G6350' => 'aar', 'Aa31LG6G16630' => 'aar', 'Aa31LG8G5320' => 'aar', 'Aa31LG9G15080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.509' => 'aag', 'Actinidia01534' => 'ach', 'Actinidia12230' => 'ach', 'Actinidia15455' => 'ach', 'Actinidia17012' => 'ach', 'Actinidia21469' => 'ach', 'Actinidia21471' => 'ach', 'Actinidia25900' => 'ach', 'Actinidia39160' => 'ach', 'Actinidia39162' => 'ach', 'Ah.01g001610' => 'amhyb', 'Ah.01g008220' => 'amhyb', 'Ah.01g023130' => 'amhyb', 'Ah.01g023140' => 'amhyb', 'Ah.07g198420' => 'amhyb', 'Ah.12g054110' => 'amhyb', 'Ah.14g089040' => 'amhyb', 'AL4G24500' => 'aly', 'AL4G31740' => 'aly', 'AL7G10420' => 'aly', 'AL7G10430' => 'aly', 'AL7G39570' => 'aly', 'AL7G39580' => 'aly', 'Aqoxy1G02089' => 'aox', 'Aqoxy1G02090' => 'aox', 'Aqoxy3G02704' => 'aox', 'Aqoxy4G01167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CG60X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84ZT1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7YTVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG01M5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI0VBI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDU755' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0RMYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY6XG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7YWW2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS9EFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMB1PG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQW77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TK5DM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U80PFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY504Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC6BIU' => 'arhy', 'AT2G29720' => 'ath', 'AT2G35660' => 'ath', 'AT4G15760' => 'ath', 'AT4G15765' => 'ath', 'AT4G38540' => 'ath', 'AT5G05320' => 'ath', 'ATR0661G025' => 'atr', 'ATR0661G272' => 'atr', 'ATR0665G057' => 'atr', 'ATR0820G061' => 'atr', 'ATR0820G246' => 'atr', 'ATR0999G001' => 'atr', 'ATR0999G002' => 'atr', 'ATR1089G037' => 'atr', 'ATR1089G040' => 'atr', 'ATR1089G141' => 'atr', 'ATR1136G109' => 'atr', 'ATR1136G114' => 'atr', 'Atru.chr12.2314' => 'acertr', 'Atru.chr3.1293' => 'acertr', 'Atru.chr3.3225' => 'acertr', 'Atru.chr3.3226' => 'acertr', 'Atru.chr4.1019' => 'acertr', 'Atru.chr5.631' => 'acertr', 'Atru.chr5.633' => 'acertr', 'Atru.chr9.1233' => 'acertr', 'AUR62007148' => 'cqu', 'AUR62010022' => 'cqu', 'AUR62010023' => 'cqu', 'AUR62010024' => 'cqu', 'AUR62010025' => 'cqu', 'AUR62013012' => 'cqu', 'AUR62013013' => 'cqu', 'AUR62013014' => 'cqu', 'AUR62013015' => 'cqu', 'AUR62015214' => 'cqu', 'AUR62015216' => 'cqu', 'AUR62017678' => 'cqu', 'AUR62017680' => 'cqu', 'AUR62018863' => 'cqu', 'BcaB04g18324' => 'bca', 'BcaB06g28859' => 'bca', 'BcaC02g07682' => 'bca', 'BcaC06g32959' => 'bca', 'BcaC06g33451' => 'bca', 'BcaC07g37929' => 'bca', 'BcaNung01979' => 'bca', 'BolC4t27938H' => 'bol', 'BolC4t27940H' => 'bol', 'BolC7t45264H' => 'bol', 'BolC7t46782H' => 'bol', 'BolC8t48310H' => 'bol', 'BraA03t14030Z' => 'bra', 'BraA03t14031Z' => 'bra', 'BraA04t18211Z' => 'bra', 'BraA06t27766Z' => 'bra', 'BraA08t33184Z' => 'bra', 'C04p64630' => 'bna', 'C07p47370' => 'bna', 'C07p63690' => 'bna', 'CAN.G1517.2' => 'can', 'CAN.G62.6' => 'can', 'CAN.G761.22' => 'can', 'CAN.G794.7' => 'can', 'CANSAT01G0181' => 'cansat', 'CANSAT01G0633' => 'cansat', 'CANSAT01G0820' => 'cansat', 'CANSAT01G1852' => 'cansat', 'CANSAT25G0866' => 'cansat', 'CANSAT25G0982' => 'cansat', 'CANSAT25G3648' => 'cansat', 'CARHR129900' => 'chi', 'CARHR290240' => 'chi', 'CARHR290250' => 'chi', 'CARHR294270' => 'chi', 'Carub.0002s1479' => 'cru', 'Carub.0003s2485' => 'cru', 'Carub.0003s2487' => 'cru', 'Carub.0004s1738' => 'cru', 'Carub.0007s0043' => 'cru', 'Carub.0007s2591' => 'cru', 'Carub.0007s2592' => 'cru', 'Ca_00242_v3' => 'car', 'Ca_03304_v3' => 'car', 'Ca_13012_v3' => 'car', 'Ca_24603_v3' => 'car', 'Ca_30763_v3' => 'car', 'CBR_g22943' => 'cbr', 'Cc01_g06760' => 'ccan', 'Cc07_g14730' => 'ccan', 'Cc08_g11580' => 'ccan', 'Cc10_g01240' => 'ccan', 'Cc10_g16200' => 'ccan', 'CDE04G1593' => 'cde', 'CDE12G0584' => 'cde', 'Cfa002808' => 'cfa', 'Cfa004819' => 'cfa', 'Cfa005262' => 'cfa', 'Cfa005263' => 'cfa', 'Cfa005264' => 'cfa', 'Cfa005265' => 'cfa', 'Cfa005267' => 'cfa', 'Cfa005271' => 'cfa', 'Cfa005273' => 'cfa', 'Cfa012666' => 'cfa', 'Cfa021497' => 'cfa', 'Cfa021498' => 'cfa', 'Cfa022315' => 'cfa', 'Cfa023952' => 'cfa', 'Cfa025437' => 'cfa', 'Ciclev10020057m.g' => 'ccl', 'Ciclev10025675m.g' => 'ccl', 'Ciclev10025686m.g' => 'ccl', 'Ciclev10027391m.g' => 'ccl', 'Ciclev10028549m.g' => 'ccl', 'Ciclev10028550m.g' => 'ccl', 'CiPaw.03G011600' => 'cil', 'CiPaw.03G129500' => 'cil', 'CiPaw.03G129600' => 'cil', 'CiPaw.03G129700' => 'cil', 'CiPaw.03G129900' => 'cil', 'CiPaw.03G130000' => 'cil', 'CiPaw.03G130100' => 'cil', 'CiPaw.04G008000' => 'cil', 'CiPaw.05G083800' => 'cil', 'CiPaw.05G083900' => 'cil', 'CiPaw.05G084000' => 'cil', 'CiPaw.05G084100' => 'cil', 'CiPaw.05G084200' => 'cil', 'CiPaw.12G047800' => 'cil', 'ClCG02G003970' => 'cla', 'ClCG09G012810' => 'cla', 'COL.COLO4_05360' => 'col', 'COL.COLO4_17362' => 'col', 'COL.COLO4_17363' => 'col', 'COL.COLO4_17364' => 'col', 'COL.COLO4_21679' => 'col', 'COL.COLO4_21680' => 'col', 'COL.COLO4_26734' => 'col', 'Cpa.g.sc21.240' => 'cpa', 'Cpa.g.sc21.241' => 'cpa', 'Cpa.g.sc21.242' => 'cpa', 'Cpa.g.sc21.243' => 'cpa', 'Cpa.g.sc89.11' => 'cpa', 'Cre16.g652050' => 'cre', 'CsaV3_3G049870' => 'csa', 'CsaV3_7G001130' => 'csa', 'CsaV3_7G001140' => 'csa', 'CSS0000711' => 'camsi', 'CSS0003685' => 'camsi', 'CSS0008871' => 'camsi', 'CSS0009382' => 'camsi', 'CSS0016077' => 'camsi', 'CSS0017918' => 'camsi', 'CSS0018095' => 'camsi', 'CSS0022426' => 'camsi', 'CSS0026738' => 'camsi', 'CSS0030532' => 'camsi', 'CSS0035917' => 'camsi', 'CSS0044493' => 'camsi', 'DCAR_000648' => 'dca', 'DCAR_001413' => 'dca', 'DCAR_001851' => 'dca', 'DCAR_003180' => 'dca', 'DCAR_005020' => 'dca', 'DCAR_009507' => 'dca', 'DCAR_010119' => 'dca', 'DCAR_010120' => 'dca', 'DCAR_010121' => 'dca', 'DCAR_014050' => 'dca', 'Dinv07839' => 'din', 'Dinv14355' => 'din', 'Dinv14356' => 'din', 'Dinv15091' => 'din', 'Dinv15092' => 'din', 'Dinv15093' => 'din', 'Dinv28855' => 'din', 'Dinv39550' => 'din', 'Dinv39551' => 'din', 'Duzib132G0825' => 'dzi', 'Duzib132G1076' => 'dzi', 'Duzib133G0167' => 'dzi', 'Duzib177G1014' => 'dzi', 'Duzib177G1071' => 'dzi', 'Duzib205G2048' => 'dzi', 'ECA247G3280' => 'eca', 'EL10Ac4g08019' => 'bvu', 'EL10Ac5g12295' => 'bvu', 'EL10Ac8g20630' => 'bvu', 'EL10Ac9g21353' => 'bvu', 'EL10Ac9g21355' => 'bvu', 'EL10Ac9g22927' => 'bvu', 'Eucgr.D02120' => 'egr', 'Eucgr.D02121' => 'egr', 'Eucgr.E03400' => 'egr', 'Eucgr.E03410' => 'egr', 'Eucgr.E03411' => 'egr', 'Eucgr.E03412' => 'egr', 'Eucgr.E03417' => 'egr', 'Eucgr.E03418' => 'egr', 'Eucgr.E03420' => 'egr', 'Eucgr.E03421' => 'egr', 'Eucgr.F04098' => 'egr', 'Eucgr.F04127' => 'egr', 'Eucgr.I00262' => 'egr', 'Eucgr.I00263' => 'egr', 'Eucgr.I00264' => 'egr', 'Eucgr.I00265' => 'egr', 'Eucgr.I00271' => 'egr', 'Eucgr.I00273' => 'egr', 'Eucgr.I00274' => 'egr', 'Eucgr.I00275' => 'egr', 'Eucgr.I01436' => 'egr', 'Eucgr.I01437' => 'egr', 'Eucgr.I01440' => 'egr', 'Eucgr.I01441' => 'egr', 'Eucgr.I01442' => 'egr', 'Eucgr.I01443' => 'egr', 'Eucgr.I01444' => 'egr', 'Eucgr.I01445' => 'egr', 'Eucgr.I01448' => 'egr', 'Eucgr.I01449' => 'egr', 'Eucgr.K01334' => 'egr', 'Eucgr.L02174' => 'egr', 'Eucgr.L03687' => 'egr', 'FAN01G2710' => 'fan', 'FAN02G3399' => 'fan', 'FAN03G2931' => 'fan', 'FAN04G0337' => 'fan', 'FAN06G0078' => 'fan', 'FAN08G2277' => 'fan', 'FAN09G3108' => 'fan', 'FAN12G1720' => 'fan', 'FAN13G3177' => 'fan', 'FAN14G2680' => 'fan', 'FAN15G1666' => 'fan', 'FAN18G0455' => 'fan', 'FAN19G0187' => 'fan', 'FAN19G1241' => 'fan', 'FAN19G2452' => 'fan', 'FAN20G3080' => 'fan', 'FAN20G3179' => 'fan', 'FAN23G0647' => 'fan', 'FAN23G2454' => 'fan', 'FAN24G0033' => 'fan', 'FAN24G0082' => 'fan', 'FAN24G1581' => 'fan', 'FAN24G2456' => 'fan', 'FAN27G2262' => 'fan', 'FAN28G1982' => 'fan', 'FAN28G2083' => 'fan', 'FAN28G2819' => 'fan', 'FvH4_1g12561' => 'fve', 'FvH4_1g23740' => 'fve', 'FvH4_1g23750' => 'fve', 'FvH4_1g23770' => 'fve', 'FvH4_1g23780' => 'fve', 'FvH4_2g15511' => 'fve', 'FvH4_3g33122' => 'fve', 'FvH4_4g08974' => 'fve', 'FvH4_5g20080' => 'fve', 'FvH4_7g03910' => 'fve', 'Glyma.01G205700' => 'gma', 'Glyma.09G233400' => 'gma', 'Glyma.10G282100' => 'gma', 'Glyma.10G282200' => 'gma', 'Glyma.10G282267' => 'gma', 'Glyma.10G282333' => 'gma', 'Glyma.10G284100' => 'gma', 'Glyma.11G037100' => 'gma', 'Glyma.12G003400' => 'gma', 'Glyma.20G105500' => 'gma', 'Glyma.20G107200' => 'gma', 'Gohir.A01G169800' => 'ghi', 'Gohir.A01G169900' => 'ghi', 'Gohir.A03G005400' => 'ghi', 'Gohir.A04G131500' => 'ghi', 'Gohir.A04G131600' => 'ghi', 'Gohir.A11G168600' => 'ghi', 'Gohir.A13G122300' => 'ghi', 'Gohir.D01G160900' => 'ghi', 'Gohir.D01G161000' => 'ghi', 'Gohir.D03G167100' => 'ghi', 'Gohir.D04G167900' => 'ghi', 'Gohir.D04G167950' => 'ghi', 'Gohir.D04G168100' => 'ghi', 'Gohir.D04G168200' => 'ghi', 'Gohir.D11G174850' => 'ghi', 'Gohir.D13G124400' => 'ghi', 'Gorai.002G199300' => 'gra', 'Gorai.002G199400' => 'gra', 'Gorai.002G199500' => 'gra', 'Gorai.002G199600' => 'gra', 'Gorai.003G176700' => 'gra', 'Gorai.003G176900' => 'gra', 'Gorai.007G187400' => 'gra', 'Gorai.012G156200' => 'gra', 'Gorai.012G156300' => 'gra', 'Gorai.012G156400' => 'gra', 'Gorai.012G156500' => 'gra', 'Gorai.013G139000' => 'gra', 'GSVIVG01007345001' => 'vvi', 'GSVIVG01008760001' => 'vvi', 'GSVIVG01023999001' => 'vvi', 'GSVIVG01024000001' => 'vvi', 'GSVIVG01024001001' => 'vvi', 'GSVIVG01026621001' => 'vvi', 'GSVIVG01026626001' => 'vvi', 'GSVIVG01026627001' => 'vvi', 'HanXRQChr04g0102521' => 'han', 'HanXRQChr04g0102531' => 'han', 'HanXRQChr04g0102541' => 'han', 'HanXRQChr04g0102571' => 'han', 'HanXRQChr04g0102581' => 'han', 'HanXRQChr04g0102601' => 'han', 'HanXRQChr09g0238221' => 'han', 'HanXRQChr09g0238391' => 'han', 'HanXRQChr12g0369071' => 'han', 'HanXRQChr12g0369091' => 'han', 'HanXRQChr12g0369111' => 'han', 'HanXRQChr12g0369121' => 'han', 'HanXRQChr12g0369161' => 'han', 'HanXRQChr12g0369181' => 'han', 'HanXRQChr12g0369191' => 'han', 'HanXRQChr12g0369211' => 'han', 'HanXRQChr13g0386951' => 'han', 'HanXRQChr13g0386961' => 'han', 'HanXRQChr13g0386971' => 'han', 'HanXRQChr16g0501951' => 'han', 'HanXRQChr16g0510671' => 'han', 'Haze_02118' => 'cav', 'Haze_02120' => 'cav', 'Haze_02121' => 'cav', 'Haze_02122' => 'cav', 'Haze_07980' => 'cav', 'Haze_14019' => 'cav', 'Haze_14020' => 'cav', 'Haze_18557' => 'cav', 'Hma1.2p1_0708F.1_g207150' => 'hma', 'Hma1.2p1_2353F.1_g320510' => 'hma', 'Hma1.2p1_3142F.1_g333070' => 'hma', 'HPP92_004415' => 'vpl', 'HPP92_004416' => 'vpl', 'HPP92_016152' => 'vpl', 'HPP92_020918' => 'vpl', 'HPP92_021064' => 'vpl', 'HPP92_022202' => 'vpl', 'Hund01701' => 'sun', 'Hund06444' => 'sun', 'Hund06445' => 'sun', 'Hund11330' => 'sun', 'Hund14500' => 'sun', 'Hund22433' => 'sun', 'Hund29794' => 'sun', 'Hund29795' => 'sun', 'Hund29797' => 'sun', 'Hund29798' => 'sun', 'Lalb_Chr02g0143461' => 'lal', 'Lalb_Chr05g0214271' => 'lal', 'Lalb_Chr19g0140401' => 'lal', 'Lj2g0021300' => 'lja', 'Lj3g0020833' => 'lja', 'Lj4A800T38' => 'lonja', 'Lj4A858G26' => 'lonja', 'Lj4C858G3' => 'lonja', 'Lj4P800T31' => 'lonja', 'Lj5g0008575' => 'lja', 'Lj5g0020128' => 'lja', 'Lj5g0026225' => 'lja', 'Lj7A414T45' => 'lonja', 'Lj7A415G59' => 'lonja', 'Lj7A415G60' => 'lonja', 'Lj7A415G61' => 'lonja', 'Lj8A275T75' => 'lonja', 'Lj9A395T27' => 'lonja', 'Lsat_1_v5_gn_0_31261' => 'lsa', 'Lsat_1_v5_gn_1_24621' => 'lsa', 'Lsat_1_v5_gn_1_24721' => 'lsa', 'Lsat_1_v5_gn_1_24741' => 'lsa', 'Lsat_1_v5_gn_6_67421' => 'lsa', 'Lsat_1_v5_gn_8_29540' => 'lsa', 'Manes.02G043700' => 'mes', 'Manes.10G015700' => 'mes', 'Manes.10G015728' => 'mes', 'Manes.10G015784' => 'mes', 'Manes.10G015950' => 'mes', 'Manes.11G097202' => 'mes', 'Manes.11G097252' => 'mes', 'Manes.12G054600' => 'mes', 'Manes.12G149600' => 'mes', 'Manes.14G118900' => 'mes', 'Mapoly0002s0090' => 'mpo', 'Mapoly0028s0123' => 'mpo', 'MBI03_g18640_MAGBIO' => 'mbi', 'MBI03_g28852_MAGBIO' => 'mbi', 'MBI03_g47690_MAGBIO' => 'mbi', 'MBI03_g47691_MAGBIO' => 'mbi', 'MBI04_g28365_MAGBIO' => 'mbi', 'MBI08_g16747_MAGBIO' => 'mbi', 'MBI08_g27805_MAGBIO' => 'mbi', 'MBI08_g30370_MAGBIO' => 'mbi', 'MBI08_g31445_MAGBIO' => 'mbi', 'MBI14_g02588_MAGBIO' => 'mbi', 'MBI17_g21474_MAGBIO' => 'mbi', 'MCO04G279' => 'mco', 'MD04G1050600' => 'mdo', 'MD05G1123500' => 'mdo', 'MD05G1123600' => 'mdo', 'MD05G1123700' => 'mdo', 'MD06G1049200' => 'mdo', 'MD07G1043700' => 'mdo', 'MD10G1041900' => 'mdo', 'MD10G1042000' => 'mdo', 'MD11G1231700' => 'mdo', 'MD11G1231900' => 'mdo', 'Medtr1g090667' => 'mtr', 'Medtr1g112740' => 'mtr', 'Medtr1g112750' => 'mtr', 'Medtr1g112780' => 'mtr', 'Medtr4g035655' => 'mtr', 'Medtr5g013250' => 'mtr', 'Medtr5g013260' => 'mtr', 'MELO3C000537.2' => 'cme', 'MELO3C001148.2' => 'cme', 'MELO3C003328.2' => 'cme', 'MELO3C003329.2' => 'cme', 'MELO3C013339.2' => 'cme', 'MELO3C013342.2' => 'cme', 'MELO3C013343.2' => 'cme', 'Migut.A01046' => 'egut', 'Migut.B00068' => 'egut', 'Migut.N03183' => 'egut', 'MSTRG.16923' => 'ama', 'MSTRG.22352' => 'ama', 'MSTRG.22913' => 'ama', 'Nitab4.5_0000031g0070' => 'nta', 'Nitab4.5_0000031g0280' => 'nta', 'Nitab4.5_0000192g0200' => 'nta', 'Nitab4.5_0000277g0050' => 'nta', 'Nitab4.5_0000498g0010' => 'nta', 'Nitab4.5_0000498g0040' => 'nta', 'Nitab4.5_0000500g0040' => 'nta', 'Nitab4.5_0000506g0060' => 'nta', 'Nitab4.5_0000925g0120' => 'nta', 'Nitab4.5_0000925g0140' => 'nta', 'Nitab4.5_0001936g0040' => 'nta', 'Nitab4.5_0002730g0050' => 'nta', 'Nitab4.5_0003456g0020' => 'nta', 'Nitab4.5_0009955g0050' => 'nta', 'Nitab4.5_0011740g0010' => 'nta', 'Nn5g27170' => 'nnu', 'Nn5g27172' => 'nnu', 'Nn5g28760' => 'nnu', 'Nn6g33809' => 'nnu', 'Nn7g38380' => 'nnu', 'Oeu006692.1' => 'oeu', 'Oeu028612.1' => 'oeu', 'Oeu028613.1' => 'oeu', 'Oeu033625.2' => 'oeu', 'Oeu040681.1' => 'oeu', 'Oeu040682.1' => 'oeu', 'Os02g0471300' => 'osa', 'Os02g0559500' => 'osa', 'Os02g0559900' => 'osa', 'Os02g0560300' => 'osa', 'Os02g0560700' => 'osa', 'Os02g0561100' => 'osa', 'Os02g0561500' => 'osa', 'Os03g0153100' => 'osa', 'Os03g0153500' => 'osa', 'Os03g0153900' => 'osa', 'Os03g0154000' => 'osa', 'Os03g0154100' => 'osa', 'Os03g0155000' => 'osa', 'Os04g0423100' => 'osa', 'Os07g0491900' => 'osa', 'Peaxi162Scf00064g00740' => 'pax', 'Peaxi162Scf00190g01010' => 'pax', 'Peaxi162Scf00289g00129' => 'pax', 'Peaxi162Scf00314g00116' => 'pax', 'Peaxi162Scf00446g00413' => 'pax', 'PGR031G0940' => 'pgr', 'PGR102G2290' => 'pgr', 'PGR119G0398' => 'pgr', 'PGR119G1097' => 'pgr', 'PGR119G1251' => 'pgr', 'PGR119G2168' => 'pgr', 'PGR119G2215' => 'pgr', 'PGR119G2321' => 'pgr', 'PGR142G1022' => 'pgr', 'PGR142G1295' => 'pgr', 'PGR142G1815' => 'pgr', 'PGR142G3398' => 'pgr', 'PGSC0003DMG400015350' => 'stu', 'PGSC0003DMG400015352' => 'stu', 'PGSC0003DMG400015355' => 'stu', 'PGSC0003DMG400024161' => 'stu', 'PGSC0003DMG400026225' => 'stu', 'PGSC0003DMG400029330' => 'stu', 'Phvul.002G000800' => 'pvu', 'Phvul.007G016700' => 'pvu', 'Phvul.007G017100' => 'pvu', 'Phvul.007G018600' => 'pvu', 'Phvul.007G018700' => 'pvu', 'Phvul.011G004100' => 'pvu', 'Potri.001G152600' => 'ptr', 'Potri.001G307500' => 'ptr', 'Potri.004G176750' => 'ptr', 'Potri.004G176950' => 'ptr', 'Potri.019G003200' => 'ptr', 'Potri.019G003300' => 'ptr', 'Potri.019G003400' => 'ptr', 'Potri.019G003500' => 'ptr', 'Potri.019G003600' => 'ptr', 'Potri.019G003700' => 'ptr', 'Potri.019G003800' => 'ptr', 'Pp3c2_37560' => 'ppa', 'Pp3c7_17950' => 'ppa', 'PRCOL_00005518' => 'pco', 'Prupe.2G043900' => 'ppe', 'Prupe.5G059700' => 'ppe', 'Prupe.6G162100' => 'ppe', 'Prupe.8G046000' => 'ppe', 'Prupe.8G167400' => 'ppe', 'Prupe.8G167500' => 'ppe', 'Prupe.8G167700' => 'ppe', 'Prupe.I003800' => 'ppe', 'Prupe.I004000' => 'ppe', 'Psat0s2220g0040' => 'psa', 'Psat1g094080' => 'psa', 'Psat2g176360' => 'psa', 'Psat6g232200' => 'psa', 'PSO017G1531' => 'pso', 'PSO063G4467' => 'pso', 'PSO135G0831' => 'pso', 'PSO210G0289' => 'pso', 'PSO210G3394' => 'pso', 'PSO210G5755' => 'pso', 'PSO339G0195' => 'pso', 'PSO384G4268' => 'pso', 'PSO541G0056' => 'pso', 'PSO541G3445' => 'pso', 'PSO541G4353' => 'pso', 'PSO541G4924' => 'pso', 'PSO541G4944' => 'pso', 'PSO541G5302' => 'pso', 'PSO541G5795' => 'pso', 'PSO541G6100' => 'pso', 'PSO541G6485' => 'pso', 'PSO675G0092' => 'pso', 'PSO675G0792' => 'pso', 'PSO675G2577' => 'pso', 'PSO675G5810' => 'pso', 'PSO675G6959' => 'pso', 'PSO675G7511' => 'pso', 'PSO675G7693' => 'pso', 'PSO675G8673' => 'pso', 'PSO724G0248' => 'pso', 'PSO761G0137' => 'pso', 'PSO761G0316' => 'pso', 'PSO761G0599' => 'pso', 'QL04p024240' => 'qlo', 'QL05p052372' => 'qlo', 'QL06p030919' => 'qlo', 'QL06p030925' => 'qlo', 'QL06p030959' => 'qlo', 'QL06p030971' => 'qlo', 'QL06p031046' => 'qlo', 'QL11p044636' => 'qlo', 'QL11p044638' => 'qlo', 'QL11p044650' => 'qlo', 'QL11p051061' => 'qlo', 'QL11p051072' => 'qlo', 'QL11p051078' => 'qlo', 'QL11p051090' => 'qlo', 'QL11p051135' => 'qlo', 'QL11p051163' => 'qlo', 'QL11p051191' => 'qlo', 'QL11p051205' => 'qlo', 'QL11p051208' => 'qlo', 'QL11p051215' => 'qlo', 'QL11p051221' => 'qlo', 'QL12p009505' => 'qlo', 'RcHm_v2.0_Chr1g0327481' => 'rch', 'RcHm_v2.0_Chr1g0327491' => 'rch', 'RcHm_v2.0_Chr2g0087851' => 'rch', 'RcHm_v2.0_Chr2g0119591' => 'rch', 'RcHm_v2.0_Chr2g0119621' => 'rch', 'RcHm_v2.0_Chr2g0119641' => 'rch', 'RcHm_v2.0_Chr2g0119651' => 'rch', 'RcHm_v2.0_Chr2g0119671' => 'rch', 'RcHm_v2.0_Chr5g0013091' => 'rch', 'RcHm_v2.0_Chr6g0246201' => 'rch', 'RcHm_v2.0_Chr6g0278521' => 'rch', 'RcHm_v2.0_Chr6g0278531' => 'rch', 'RcHm_v2.0_Chr6g0278551' => 'rch', 'RcHm_v2.0_Chr6g0278571' => 'rch', 'RcHm_v2.0_Chr6g0278591' => 'rch', 'RcHm_v2.0_Chr6g0278611' => 'rch', 'RcHm_v2.0_Chr6g0278671' => 'rch', 'RcHm_v2.0_Chr6g0278691' => 'rch', 'RcHm_v2.0_Chr6g0278701' => 'rch', 'RcHm_v2.0_Chr7g0204941' => 'rch', 'Rhsim04G0160100' => 'rsi', 'Rhsim05G0053600' => 'rsi', 'Rhsim05G0053700' => 'rsi', 'Rhsim05G0097700' => 'rsi', 'Rhsim06G0013600' => 'rsi', 'Rhsim06G0013700' => 'rsi', 'Rhsim06G0014200' => 'rsi', 'Rhsim07G0130300' => 'rsi', 'Rhsim07G0130400' => 'rsi', 'Rhsim12G0000700' => 'rsi', 'Rhsim12G0041700' => 'rsi', 'Sabra01G0122600' => 'sbr', 'Sabra04G0118700' => 'sbr', 'Sabra04G0118800' => 'sbr', 'Sabra16G0193200' => 'sbr', 'Sabra16G0193300' => 'sbr', 'Sabra16G0193400' => 'sbr', 'Sabra19G0004200' => 'sbr', 'Sabra19G0021700' => 'sbr', 'SalBow5G1274' => 'sbo', 'SalBow5G3389' => 'sbo', 'SalBow5G4688' => 'sbo', 'SalBow5G5458' => 'sbo', 'SalBow6G0610' => 'sbo', 'SalBow6G2722' => 'sbo', 'SalBow6G4814' => 'sbo', 'SalBow6G5550' => 'sbo', 'SalBow6G6410' => 'sbo', 'Sc01g0008120' => 'sci', 'Sc01g0008130' => 'sci', 'Sc01g0008140' => 'sci', 'Sc03g0010900' => 'sci', 'Sc03g0010910' => 'sci', 'Sc06g0000020' => 'sci', 'Sc06g0001300' => 'sci', 'Sc06g0001310' => 'sci', 'Sc06g0001330' => 'sci', 'Sc06g0001340' => 'sci', 'Sc06g0006790' => 'sci', 'Sc06g0006800' => 'sci', 'Sc06g0006810' => 'sci', 'Sc06g0007000' => 'sci', 'Sc08g0002800' => 'sci', 'Sc08g0002820' => 'sci', 'Sc21g0004430' => 'sci', 'Sc21g0004440' => 'sci', 'Sc21g0004450' => 'sci', 'Sc26g0004430' => 'sci', 'Sc26g0004440' => 'sci', 'Sed0001217' => 'sed', 'Sed0022161' => 'sed', 'Sed0027272' => 'sed', 'SEGI_02464' => 'sgi', 'SEGI_03917' => 'sgi', 'SEGI_05995' => 'sgi', 'SEGI_09715' => 'sgi', 'SEGI_10772' => 'sgi', 'SEGI_10804' => 'sgi', 'SEGI_12447' => 'sgi', 'SEGI_12581' => 'sgi', 'SEGI_17954' => 'sgi', 'SEGI_19437' => 'sgi', 'SEGI_19624' => 'sgi', 'SEGI_24727' => 'sgi', 'SEGI_26755' => 'sgi', 'SEGI_29483' => 'sgi', 'SEGI_29696' => 'sgi', 'SEGI_29866' => 'sgi', 'SEGI_29932' => 'sgi', 'SEGI_30806' => 'sgi', 'SEGI_33011' => 'sgi', 'SEGI_35816' => 'sgi', 'SEGI_36045' => 'sgi', 'SEGI_38819' => 'sgi', 'SGA_v2.0_scaffold199G41238' => 'sas', 'SGA_v2.0_scaffold207G41934' => 'sas', 'SHI15530' => 'shi', 'SHI15531' => 'shi', 'SMO146G0304' => 'smo', 'Solyc04g025650.3' => 'sly', 'Solyc06g060880.4' => 'sly', 'Solyc08g078040.4' => 'sly', 'Solyc12g013690.2' => 'sly', 'Solyc12g013720.1' => 'sly', 'Solyc12g089385.1' => 'sly', 'Sopen04g013330' => 'spe', 'Sopen06g021030' => 'spe', 'Sopen08g026550' => 'spe', 'Sopen12g007040' => 'spe', 'Sopen12g007070' => 'spe', 'Sopen12g031240' => 'spe', 'Sp4g17910' => 'spa', 'Sp7g14090' => 'spa', 'Sp7g14100' => 'spa', 'Sp7g37230' => 'spa', 'TAR222G0001' => 'tar', 'TAR376G0616' => 'tar', 'TAR376G0721' => 'tar', 'TAR381G0846' => 'tar', 'TAR381G0893' => 'tar', 'TAR381G1354' => 'tar', 'TAR628G0613' => 'tar', 'TAR628G0750' => 'tar', 'TAR628G0763' => 'tar', 'TAR628G0859' => 'tar', 'TAR628G1167' => 'tar', 'TAR628G1183' => 'tar', 'TAR629G0790' => 'tar', 'THA.LOC104802571' => 'tha', 'THA.LOC104802572' => 'tha', 'THA.LOC104804090' => 'tha', 'THA.LOC104812767' => 'tha', 'THA.LOC104817632' => 'tha', 'THA.LOC104820256' => 'tha', 'THA.LOC104821770' => 'tha', 'Thecc.02G057500' => 'tca', 'Thecc.02G057600' => 'tca', 'Thecc.03G243700' => 'tca', 'Thecc.04G053600' => 'tca', 'Thecc.08G188900' => 'tca', 'Thhalv10016655m.g' => 'esa', 'Thhalv10025344m.g' => 'esa', 'Thhalv10025376m.g' => 'esa', 'Thhalv10025403m.g' => 'esa', 'TPR.G10954' => 'tpr', 'TPR.G15127' => 'tpr', 'TPR.G18518' => 'tpr', 'TPR.G2438' => 'tpr', 'TPR.G26595' => 'tpr', 'TPR.G26597' => 'tpr', 'TPR.G29600' => 'tpr', 'TPR.G31435' => 'tpr', 'TPR.G34937' => 'tpr', 'TPR.G35328' => 'tpr', 'TPR.G40586' => 'tpr', 'TPR.G871' => 'tpr', 'TWI15G0407' => 'twi', 'TWI31G1467' => 'twi', 'TWI74G0661' => 'twi', 'TWI75G0346' => 'twi', 'TWI75G0719' => 'twi', 'TWI75G0842' => 'twi', 'TWI81G0232' => 'twi', 'unitig_21.g20010' => 'ugi', 'unitig_21.g20011' => 'ugi', 'unitig_61.g26180' => 'ugi', 'unitig_749.g13985' => 'ugi', 'vmacro00039' => 'vma', 'vmacro00040' => 'vma', 'vmacro00904' => 'vma', 'vmacro00910' => 'vma', 'vmacro00911' => 'vma', 'vmacro00912' => 'vma', 'vmacro00913' => 'vma', 'vmacro01140' => 'vma', 'vmacro17317' => 'vma', 'vmacro17318' => 'vma', 'vmacro21858' => 'vma', 'vmacro21859' => 'vma', 'vmacro21860' => 'vma', 'vmacro23121' => 'vma', 'vmacro23122' => 'vma', 'vmacro23123' => 'vma', 'vmacro23124' => 'vma', 'vmacro23218' => 'vma', 'vmacro23220' => 'vma', 'VMungo0720G0302' => 'vmu', 'VMungo0720G0504' => 'vmu', 'VMungo0720G1009' => 'vmu', 'VMungo0720G2395' => 'vmu', 'VMungo1127G1623' => 'vmu', 'VMungo1215G0404' => 'vmu', 'Zm00001eb243970' => 'zma', 'Zm00001eb244000' => 'zma', 'Zm00001eb244010' => 'zma', 'Zm00001eb321780' => 'zma', 'Zm00001eb403180' => 'zma', 'Zm00001eb403190' => 'zma', 'Zm00001eb422370' => 'zma' ) $gf_id = 'HOM05D000686' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000686' ) $data_identifier = 'HOM05D000686' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 12, 'acertr' => (int) 8, 'cqu' => (int) 14, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 4, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 15, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 1, 'bvu' => (int) 6, 'egr' => (int) 33, 'fan' => (int) 27, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 21, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 3, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 5, 'pgr' => (int) 12, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 29, 'qlo' => (int) 22, 'rch' => (int) 20, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 9, 'sci' => (int) 21, 'sed' => (int) 3, 'sgi' => (int) 22, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 19, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422370' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1